Samuel St-Jean

Publications

• Harmonization of diffusion MRI data sets with adaptive dictionary learning
  St-Jean, Samuel, Viergever, Max A, Leemans, Alexander Nov 2020 in Human Brain Mapping 41 (16), p. 4478-4499
• Automated characterization of noise distributions in diffusion MRI data
  St-Jean, SJGRY, de Luca, A, Tax, Chantal, Viergever, Max A., Leemans, Alexander Oct 2020 in Medical Image Analysis 65
• Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms
  Tax, Chantal Mw, Grussu, Francesco, Kaden, Enrico, Ning, Lipeng, Rudrapatna, Umesh, Evans, John, St-Jean, Samuel, Leemans, Alexander, Koppers, Simon, Merhof, Dorit, Ghosh, Aurobrata, Tanno, Ryutaro, Alexander, Daniel C, Zappalà, Stefano, Charron, Cyril, Kusmia, Slawomir, Linden, David Ej, Jones, Derek K, Veraart, Jelle Jul 2019 in NeuroImage 195 p. 285-299
• Obtaining representative core streamlines for white matter tractometry of the human brain
  Chamberland, Maxime, St-jean, Samuel, Tax, Chantal M W, Derek, K may 2019 in Obtaining representative core streamlines for white matter tractometry of the human brain: Computational Diffusion MRI p. 359-366 (; vol. )
• Author Correction: The challenge of mapping the human connectome based on diffusion tractography (Nature Communications, (2017), 8, 1, (1349), 10.1038/s41467-017-01285-x)
  Maier-Hein, Klaus H., Neher, Peter F., Houde, Jean Christophe, Côté, Marc Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang Cheng, Lin, Ying Chia, Ji, Qing, Reddick, Wilburn E., Glass, John O., Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, He, Renjie, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J. Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua, Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed Nov 2019 in Nature Communications [E] 10 (1),
• Reducing variability in along-tract analysis with diffusion profile realignment
  St-Jean, S, Chamberland, Maxime, Leemans, Alexander, Viergever, MA Oct 2019 in NeuroImage 199 p. 663-679
• Automatic, fast and robust characterization of noise distributions for diffusion MRI
  St-Jean, Samuel, De Luca, Alberto, Viergever, Max A., Leemans, Alexander sep 2018 in Automatic, fast and robust characterization of noise distributions for diffusion MRI: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings p. 304-312 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11070 LNCS)
• The challenge of mapping the human connectome based on diffusion tractography
  Maier-Hein, Klaus H, Neher, Peter F, Houde, Jean-Christophe, Côté, Marc-Alexandre, Garyfallidis, Eleftherios, Zhong, Jidan, Chamberland, Maxime, Yeh, Fang-Cheng, Lin, Ying-Chia, Ji, Qing, Reddick, Wilburn E, Glass, John O, Chen, David Qixiang, Feng, Yuanjing, Gao, Chengfeng, Wu, Ye, Ma, Jieyan, Renjie, H, Li, Qiang, Westin, Carl Fredrik, Deslauriers-Gauthier, Samuel, González, J Omar Ocegueda, Paquette, Michael, St-Jean, Samuel, Girard, Gabriel, Rheault, François, Sidhu, Jasmeen, Tax, Chantal M.W., Guo, Fenghua , Mesri, Hamed Y., Dávid, Szabolcs, Froeling, Martijn, Heemskerk, Anneriet M., Leemans, Alexander, Boré, Arnaud, Pinsard, Basile, Bedetti, Christophe, Desrosiers, Matthieu, Brambati, Simona, Doyon, Julien, Sarica, Alessia, Vasta, Roberta, Cerasa, Antonio, Quattrone, Aldo, Yeatman, Jason, Khan, Ali R., Hodges, Wes, Alexander, Simon, Romascano, David, Barakovic, Muhamed, Auría, Anna, Esteban, Oscar, Lemkaddem, Alia, Thiran, Jean-Philippe, Cetingul, H Ertan, Odry, Benjamin L, Mailhe, Boris, Nadar, Mariappan S, Pizzagalli, Fabrizio, Prasad, Gautam, Villalon-Reina, Julio E, Galvis, Justin, Thompson, Paul M., Requejo, Francisco De Santiago, Laguna, Pedro Luque, Lacerda, Luis Miguel, Barrett, Rachel, Dell'Acqua, Flavio, Catani, Marco, Petit, Laurent, Caruyer, Emmanuel, Daducci, Alessandro, Dyrby, Tim B, Holland-Letz, Tim, Hilgetag, Claus C., Stieltjes, Bram, Descoteaux, Maxime Nov 2017 in Nature Communications [E] 8 (1),
• Non Local Spatial and Angular Matching: Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising
  St-Jean, Samuel, Coupe, Pierrick, Descoteaux, Maxime Aug 2016 in Medical Image Analysis 32 p. 115-130
• Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?
  Ning, Lipeng, Laun, Frederik, Gur, Yaniv, DiBella, Edward V. R., Deslauriers-Gauthier, Samuel, Megherbi, Thinhinane, Ghosh, Aurobrata, Zucchelli, Mauro, Menegaz, Gloria, Fick, Rutger, St-Jean, Samuel, Paquette, Michael, Aranda, Ramon, Descoteaux, Maxime, Deriche, Rachid, O'Donnell, Lauren, Rathi, Yogesh Dec 2015 in Medical Image Analysis 26 (1), p. 316-331